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Prof. Srinivas Aluru
Research group

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    • Arabidopsis Networks Analysis
    • Graph Connectivity
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Research focus

We are an interdisciplinary research group in parallel and high performance computing focusing on applications-driven algorithmic research, primarily in the area of bioinformatics and systems biology.

Ongoing projects

  1. Parallel Bioinformatics Library for Short Sequences
  2. Parallel Suffix Array Construction
  3. Arabidopsis Networks

Completed projects

  1. Parallel Spectrum-based Error Correction
  2. Computing Connected Components in Large Undirected Graphs

Recent Publications

  • On the complexity of sequence to graph alignment
  • Accelerating sequence alignment to graphs
  • A fast adaptive algorithm for computing whole-genome homology maps
  • Cooperative neural networks (CoNN): Exploiting prior independence structure for improved classification
  • Algorithmic framework for approximate matching under bounded edits with applications to sequence analysis
More...

Recent activity

  • Kishore successfully defended his Ph.D. thesis titled "Parallel Algorithms for Enabling Fast and Scalable Analysis of High-throughput Sequencing Datasets" . Congrats Kishore!
  • Ankit Srivastava presented the paper Parallel interval stabbing on the automata processor at the Sixth Workshop on Irregular Applications: Architectures and Algorithms (co-located with SC 16)
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