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Thankachan SV, Chockalingam SP, Liu Y, Krishnan A, Aluru S.  2015.  A greedy alignment-free distance estimator for phylogenetic inference. Computational Advances in Bio and Medical Sciences (ICCABS), 2015 IEEE 5th International Conference on.
Thankachan SV, Apostolico A, Aluru S.  2016.  A Provably Efficient Algorithm for the k-Mismatch Average Common Substring Problem. Journal of Computational Biology. 23:472–482.